Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC15.29■□□□□ 0.04
Col18a1P39061 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Gstm3-201ENSMUST00000004136 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Fcrla-201ENSMUST00000046322 1679 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.29■□□□□ 0.04
Col18a1P39061 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 1700019D03Rik-205ENSMUST00000190726 702 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Col18a1P39061 AC102523.1-201ENSMUST00000228706 1144 ntBASIC15.29■□□□□ 0.04
Col18a1P39061 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Ms4a7-202ENSMUST00000056035 882 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Col18a1P39061 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col18a1P39061 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC15.28■□□□□ 0.04
Col18a1P39061 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Col18a1P39061 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Col18a1P39061 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Gm3283-201ENSMUST00000199319 1350 ntBASIC15.28■□□□□ 0.04
Col18a1P39061 Trav13-2-201ENSMUST00000103658 390 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Col18a1P39061 Dusp3-207ENSMUST00000176261 496 ntTSL 3 BASIC15.28■□□□□ 0.04
Col18a1P39061 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Gm46210-201ENSMUST00000218800 577 ntTSL 3 BASIC15.28■□□□□ 0.04
Col18a1P39061 Gm46349-201ENSMUST00000219678 917 ntTSL 5 BASIC15.28■□□□□ 0.04
Col18a1P39061 AC124356.1-201ENSMUST00000221469 698 ntBASIC15.28■□□□□ 0.04
Col18a1P39061 AC101205.2-201ENSMUST00000226206 715 ntBASIC15.28■□□□□ 0.04
Col18a1P39061 Gm10238-201ENSMUST00000089689 408 ntBASIC15.28■□□□□ 0.04
Col18a1P39061 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Col18a1P39061 Hottip-201ENSMUST00000141300 2346 ntTSL 2 BASIC15.28■□□□□ 0.04
Col18a1P39061 Grk6-205ENSMUST00000224653 2976 ntBASIC15.28■□□□□ 0.04
Col18a1P39061 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
Col18a1P39061 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Klk1b26-201ENSMUST00000048945 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC15.27■□□□□ 0.04
Col18a1P39061 Mok-204ENSMUST00000177224 551 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 4930444A19Rik-202ENSMUST00000190007 633 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Gm26901-202ENSMUST00000193106 256 ntTSL 3 BASIC15.27■□□□□ 0.04
Col18a1P39061 Gm9409-201ENSMUST00000197017 316 ntBASIC15.27■□□□□ 0.04
Col18a1P39061 Gm6370-202ENSMUST00000198912 1017 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
Col18a1P39061 Gm44917-201ENSMUST00000208798 520 ntBASIC15.27■□□□□ 0.04
Col18a1P39061 AC159196.1-201ENSMUST00000225524 377 ntBASIC15.27■□□□□ 0.04
Col18a1P39061 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Col18a1P39061 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Col18a1P39061 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col18a1P39061 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col18a1P39061 Gas7-202ENSMUST00000108680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col18a1P39061 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Col18a1P39061 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC15.27■□□□□ 0.03
Col18a1P39061 Atp6v1c2-202ENSMUST00000095820 1549 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col18a1P39061 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Col18a1P39061 Gm18986-201ENSMUST00000216029 1986 ntBASIC15.27■□□□□ 0.03
Col18a1P39061 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Ccdc42-202ENSMUST00000102612 785 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC15.26■□□□□ 0.03
Col18a1P39061 Gm11919-201ENSMUST00000117609 721 ntBASIC15.26■□□□□ 0.03
Col18a1P39061 Gm11700-201ENSMUST00000119409 403 ntBASIC15.26■□□□□ 0.03
Col18a1P39061 Gm13027-201ENSMUST00000135858 241 ntTSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Fbxo16-201ENSMUST00000169656 1019 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Gm17514-201ENSMUST00000181863 1102 ntTSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Arl14-201ENSMUST00000183126 1200 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Col18a1P39061 Gm29164-201ENSMUST00000185454 1024 ntBASIC15.26■□□□□ 0.03
Col18a1P39061 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Cep97-202ENSMUST00000117468 2887 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Hsf2-204ENSMUST00000220042 2430 ntTSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Rap1gap-201ENSMUST00000047243 3247 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Trim34b-202ENSMUST00000180136 1535 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC15.26■□□□□ 0.03
Col18a1P39061 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC15.26■□□□□ 0.03
Col18a1P39061 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Cep70-207ENSMUST00000190715 1768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Col18a1P39061 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms