Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Ccndbp1-202ENSMUST00000099488 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Rgs6-211ENSMUST00000191107 1621 ntTSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Col1a1P11087 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC13.69□□□□□ -0.22
Col1a1P11087 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Col1a1P11087 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Nnmt-202ENSMUST00000119426 912 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Gm5555-201ENSMUST00000120352 1111 ntBASIC13.68□□□□□ -0.22
Col1a1P11087 Cnfn-202ENSMUST00000167591 698 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.68□□□□□ -0.22
Col1a1P11087 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Fgfr1-203ENSMUST00000119398 3789 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC13.68□□□□□ -0.22
Col1a1P11087 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Clec16a-204ENSMUST00000115824 6244 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Clec16a-202ENSMUST00000066345 6244 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.68□□□□□ -0.22
Col1a1P11087 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Col1a1P11087 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.68□□□□□ -0.22
Col1a1P11087 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Col1a1P11087 AC034099.1-202ENSMUST00000133843 833 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 9130204K15Rik-202ENSMUST00000150312 696 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 C630004L07Rik-201ENSMUST00000193236 1275 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 CT030166.5-201ENSMUST00000222249 420 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 AC142266.1-201ENSMUST00000228107 415 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Bckdk-202ENSMUST00000124533 1792 ntTSL 3 BASIC13.67□□□□□ -0.22
Col1a1P11087 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm25562-201ENSMUST00000104608 133 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Gm11957-201ENSMUST00000118304 779 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Gm8302-201ENSMUST00000119217 852 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Gm5909-201ENSMUST00000119768 1281 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 Gm13981-201ENSMUST00000122360 447 ntBASIC13.67□□□□□ -0.22
Col1a1P11087 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm12705-201ENSMUST00000129460 872 ntTSL 2 BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC13.67□□□□□ -0.22
Col1a1P11087 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Col1a1P11087 Gm25226-201ENSMUST00000158198 123 ntBASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 79.3 ms