Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Col6a1Q04857 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Col6a1Q04857 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm25076-201ENSMUST00000104098 132 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC13.11□□□□□ -0.31
Col6a1Q04857 1810021B22Rik-201ENSMUST00000150364 652 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm8815-201ENSMUST00000173809 620 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm29499-201ENSMUST00000189151 486 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm28329-201ENSMUST00000191208 689 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm29171-201ENSMUST00000191397 486 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Gm7959-201ENSMUST00000221823 1078 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.11□□□□□ -0.31
Col6a1Q04857 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC13.11□□□□□ -0.31
Col6a1Q04857 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Col6a1Q04857 Slc6a18-204ENSMUST00000220650 1728 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm15784-201ENSMUST00000120260 1462 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Fam198a-203ENSMUST00000214536 2789 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Cdc42se1-203ENSMUST00000107200 637 ntTSL 3 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Hmgcll1-202ENSMUST00000117981 1189 ntTSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm5638-201ENSMUST00000118618 1258 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm14942-201ENSMUST00000119642 336 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Col6a1Q04857 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm8956-201ENSMUST00000203939 825 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Gm9661-201ENSMUST00000221611 1122 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Col6a1Q04857 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Col6a1Q04857 AC164702.1-201ENSMUST00000220135 2212 ntBASIC13.1□□□□□ -0.31
Col6a1Q04857 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 86.9 ms