Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
Hoxd3P09027 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Rnf17-202ENSMUST00000223627 2077 ntBASIC9.46□□□□□ -0.89
Hoxd3P09027 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC9.46□□□□□ -0.89
Hoxd3P09027 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
Hoxd3P09027 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.89
Hoxd3P09027 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hoxd3P09027 Otof-202ENSMUST00000114747 6881 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Mir466f-3-201ENSMUST00000104788 94 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 B4galt4-203ENSMUST00000114710 837 ntTSL 3 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm24749-201ENSMUST00000157838 343 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm23776-201ENSMUST00000158993 325 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm26609-201ENSMUST00000181302 852 ntTSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm26907-201ENSMUST00000181794 729 ntTSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Mir6927-201ENSMUST00000184494 71 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm28450-201ENSMUST00000187349 638 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 1700121L03Rik-201ENSMUST00000187796 704 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm28926-201ENSMUST00000191063 680 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm19030-201ENSMUST00000194947 552 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm44332-201ENSMUST00000203712 433 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm45259-201ENSMUST00000209217 1006 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 1700124M09Rik-201ENSMUST00000217047 305 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm18730-201ENSMUST00000218038 343 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 4930466K18Rik-201ENSMUST00000219458 906 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 AC169036.1-201ENSMUST00000227994 296 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm43463-201ENSMUST00000195967 1803 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Vmn1r37-202ENSMUST00000226311 1305 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC9.46□□□□□ -0.9
Hoxd3P09027 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm17435-202ENSMUST00000212699 1998 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hoxd3P09027 Gm45210-201ENSMUST00000206401 1577 ntBASIC9.46□□□□□ -0.9
Hoxd3P09027 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC9.46□□□□□ -0.9
Hoxd3P09027 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Matn2-203ENSMUST00000226766 3252 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm7857-201ENSMUST00000117957 358 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm14905-201ENSMUST00000122351 639 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm12591-201ENSMUST00000122407 1177 ntBASIC9.45□□□□□ -0.9
Hoxd3P09027 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm12130-201ENSMUST00000133599 639 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm11948-201ENSMUST00000142322 539 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hoxd3P09027 Gm15597-201ENSMUST00000145924 1050 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms