Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Pck2-205ENSMUST00000226352 2784 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Fcer2a-201ENSMUST00000005678 2242 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm13263-201ENSMUST00000121271 838 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 AC166344.1-201ENSMUST00000223745 674 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 AC134869.4-202ENSMUST00000224350 837 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Ginm1-202ENSMUST00000065124 300 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC13.97□□□□□ -0.17
Trim56Q80VI1 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Trim56Q80VI1 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Gm9062-201ENSMUST00000117712 727 ntBASIC13.96□□□□□ -0.17
Trim56Q80VI1 Gm8731-201ENSMUST00000118088 412 ntBASIC13.96□□□□□ -0.17
Trim56Q80VI1 Timm22-202ENSMUST00000120699 746 ntTSL 3 BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC13.96□□□□□ -0.17
Trim56Q80VI1 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Gm5852-201ENSMUST00000194119 1021 ntBASIC13.96□□□□□ -0.17
Trim56Q80VI1 Gm5982-201ENSMUST00000196234 512 ntBASIC13.96□□□□□ -0.17
Trim56Q80VI1 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Mill2-201ENSMUST00000072386 1121 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Trim56Q80VI1 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Trim56Q80VI1 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Trim56Q80VI1 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC13.96□□□□□ -0.18
Trim56Q80VI1 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC13.96□□□□□ -0.18
Trim56Q80VI1 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Trim56Q80VI1 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13.96□□□□□ -0.18
Trim56Q80VI1 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Lgals3bp-201ENSMUST00000043722 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm13916-201ENSMUST00000117368 628 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm11783-201ENSMUST00000119549 885 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm3948-201ENSMUST00000147795 421 ntTSL 3 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm38151-201ENSMUST00000195085 289 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm18753-201ENSMUST00000201000 566 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm45909-201ENSMUST00000212413 1031 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 CT009713.8-202ENSMUST00000224732 385 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 1700128F08Rik-201ENSMUST00000034483 1110 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gm43727-201ENSMUST00000198021 2647 ntBASIC13.95□□□□□ -0.18
Trim56Q80VI1 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Trim56Q80VI1 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms