Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm38344-201ENSMUST00000195306 1353 ntBASIC12.29□□□□□ -0.44
Sox9Q04887 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm42480-201ENSMUST00000198434 2595 ntBASIC12.28□□□□□ -0.44
Sox9Q04887 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Sox9Q04887 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Sox9Q04887 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Tcl1-202ENSMUST00000101071 1299 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Ighv7-1-201ENSMUST00000103474 363 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm11996-201ENSMUST00000117538 915 ntBASIC12.28□□□□□ -0.44
Sox9Q04887 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm12906-201ENSMUST00000154610 441 ntBASIC12.28□□□□□ -0.44
Sox9Q04887 Tcl1-204ENSMUST00000176579 760 ntTSL 2 BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.28□□□□□ -0.44
Sox9Q04887 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm23105-201ENSMUST00000083719 134 ntBASIC12.28□□□□□ -0.44
Sox9Q04887 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 D930032P07Rik-201ENSMUST00000181393 1314 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Sgca-202ENSMUST00000103162 1724 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Sox9Q04887 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Sox9Q04887 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 AC126262.1-201ENSMUST00000221802 1904 ntBASIC12.27□□□□□ -0.44
Sox9Q04887 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Sox9Q04887 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Sox9Q04887 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Sox9Q04887 Gm4900-201ENSMUST00000222046 1628 ntBASIC12.27□□□□□ -0.44
Sox9Q04887 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
Sox9Q04887 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Gm12337-201ENSMUST00000119634 400 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Gm14247-201ENSMUST00000120950 237 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Gm11789-203ENSMUST00000140645 737 ntTSL 2 BASIC12.27□□□□□ -0.45
Sox9Q04887 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC12.27□□□□□ -0.45
Sox9Q04887 Gm17192-201ENSMUST00000169031 511 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Gm37638-201ENSMUST00000194337 1123 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Gm38151-201ENSMUST00000195085 289 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Gm37826-201ENSMUST00000195329 322 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC12.27□□□□□ -0.45
Sox9Q04887 AC122346.3-201ENSMUST00000223983 306 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 AC142266.1-201ENSMUST00000228107 415 ntBASIC12.27□□□□□ -0.45
Sox9Q04887 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Krtap4-13-201ENSMUST00000050106 815 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sox9Q04887 Rnf183-201ENSMUST00000079420 573 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sox9Q04887 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Sox9Q04887 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sox9Q04887 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Sox9Q04887 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Sox9Q04887 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.26□□□□□ -0.45
Sox9Q04887 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Sox9Q04887 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.26□□□□□ -0.45
Sox9Q04887 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Sox9Q04887 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms