Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gm13342-201ENSMUST00000121055 207 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gm18304-201ENSMUST00000189162 546 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gm42693-201ENSMUST00000196779 631 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gm44974-201ENSMUST00000206387 1279 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 AC098716.1-201ENSMUST00000213527 703 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gm17823-201ENSMUST00000217830 1006 ntBASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Olfr742-203ENSMUST00000217437 2244 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Gtf2i-219ENSMUST00000174155 4141 ntAPPRIS P4 TSL 2 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Tro-202ENSMUST00000087258 6559 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Zfp235-201ENSMUST00000056549 3373 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Arpp21-223ENSMUST00000162097 3952 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Spns3-202ENSMUST00000092940 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Ttll10-202ENSMUST00000051509 2304 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Tacc2-205ENSMUST00000207282 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Myh13-203ENSMUST00000180845 5991 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Ddx28Q9CWT6 Mknk2-201ENSMUST00000003433 3065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Hcrtr2-203ENSMUST00000184757 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm11658-201ENSMUST00000120913 1008 ntBASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Ppm1h-208ENSMUST00000162969 811 ntTSL 3 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm2467-201ENSMUST00000182266 1010 ntBASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm6981-201ENSMUST00000182467 1008 ntBASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 AC164099.2-201ENSMUST00000227795 2005 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 E030026E10Rik-201ENSMUST00000200395 2217 ntBASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Rims1-206ENSMUST00000115273 6107 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Slc37a4-207ENSMUST00000215420 2128 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Ddx28Q9CWT6 Gm35507-201ENSMUST00000197932 2761 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Lrrc36-201ENSMUST00000067305 2082 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Pidd1-202ENSMUST00000106005 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Pde4c-207ENSMUST00000224874 3099 ntAPPRIS ALT2 BASIC11.16□□□□□ -0.62
Ddx28Q9CWT6 Nckap5-212ENSMUST00000162877 2630 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 48.9 ms