Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
LHX1P48742 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX1P48742 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.82■□□□□ 0.12
LHX1P48742 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX1P48742 EMC4-209ENST00000559421 497 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX1P48742 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.82■□□□□ 0.12
LHX1P48742 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.82■□□□□ 0.12
LHX1P48742 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.82■□□□□ 0.12
LHX1P48742 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LHX1P48742 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.82■□□□□ 0.12
LHX1P48742 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.82■□□□□ 0.12
LHX1P48742 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
LHX1P48742 CICP23-201ENST00000605013 2741 ntBASIC15.81■□□□□ 0.12
LHX1P48742 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.81■□□□□ 0.12
LHX1P48742 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
LHX1P48742 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.81■□□□□ 0.12
LHX1P48742 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC15.81■□□□□ 0.12
LHX1P48742 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 FAM58BP-201ENST00000439056 645 ntBASIC15.81■□□□□ 0.12
LHX1P48742 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.81■□□□□ 0.12
LHX1P48742 PUDPP3-201ENST00000445368 636 ntBASIC15.81■□□□□ 0.12
LHX1P48742 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
LHX1P48742 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 AC004898.1-201ENST00000451057 766 ntBASIC15.81■□□□□ 0.12
LHX1P48742 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 MRPL37P1-201ENST00000592451 1337 ntBASIC15.81■□□□□ 0.12
LHX1P48742 AC243960.2-201ENST00000600996 747 ntBASIC15.81■□□□□ 0.12
LHX1P48742 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 AC007663.3-201ENST00000609632 465 ntBASIC15.81■□□□□ 0.12
LHX1P48742 AC020907.1-201ENST00000616460 1350 ntBASIC15.81■□□□□ 0.12
LHX1P48742 AL023803.2-201ENST00000620080 638 ntBASIC15.81■□□□□ 0.12
LHX1P48742 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LHX1P48742 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LHX1P48742 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
LHX1P48742 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 AC018442.1-201ENST00000421439 2061 ntBASIC15.8■□□□□ 0.12
LHX1P48742 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LHX1P48742 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC15.8■□□□□ 0.12
LHX1P48742 AL035414.1-201ENST00000451327 857 ntBASIC15.8■□□□□ 0.12
LHX1P48742 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC15.8■□□□□ 0.12
LHX1P48742 AC126915.1-201ENST00000522847 1038 ntBASIC15.8■□□□□ 0.12
LHX1P48742 AP001258.2-201ENST00000529891 490 ntBASIC15.8■□□□□ 0.12
LHX1P48742 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 AC009955.4-201ENST00000597192 544 ntBASIC15.8■□□□□ 0.12
LHX1P48742 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LHX1P48742 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.8■□□□□ 0.12
LHX1P48742 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LHX1P48742 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms