Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Sh3rf1Q69ZI1 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Map3k12-201ENSMUST00000023812 5182 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm26794-201ENSMUST00000180810 4312 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm14277-201ENSMUST00000121195 360 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm27046-201ENSMUST00000182160 463 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm27341-201ENSMUST00000183570 106 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm4034-201ENSMUST00000187674 480 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm38317-201ENSMUST00000195564 343 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm38092-201ENSMUST00000195600 653 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm43138-201ENSMUST00000199123 708 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm13097-201ENSMUST00000210722 397 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm9004-201ENSMUST00000218739 1222 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gm38055-201ENSMUST00000195353 2217 ntBASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Sh3rf1Q69ZI1 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Ptprh-201ENSMUST00000049113 3495 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Poldip3-201ENSMUST00000058793 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 AC124397.2-201ENSMUST00000225575 2215 ntBASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm15547-201ENSMUST00000122152 333 ntBASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm8369-204ENSMUST00000188633 1227 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Gm45650-201ENSMUST00000211162 2169 ntTSL 5 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Itgb4-204ENSMUST00000106460 5919 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sh3rf1Q69ZI1 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 63.5 ms