Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm9136-201ENSMUST00000193368 454 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm18056-201ENSMUST00000207670 568 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm18061-201ENSMUST00000208350 562 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm18063-201ENSMUST00000208529 568 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Gm18052-201ENSMUST00000208750 559 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Upf3bQ3ULL6 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm43174-201ENSMUST00000195914 2445 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm42943-201ENSMUST00000199676 3242 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm5525-201ENSMUST00000190438 1312 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm12380-201ENSMUST00000119012 544 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm14208-201ENSMUST00000119645 678 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm11660-201ENSMUST00000120955 412 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Ly6g6c-202ENSMUST00000173478 962 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gstp-ps-201ENSMUST00000195526 631 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm18038-201ENSMUST00000197900 485 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm19287-201ENSMUST00000203190 358 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm4157-201ENSMUST00000211647 679 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 AC107638.1-201ENSMUST00000213690 1061 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm5705-201ENSMUST00000066241 711 ntBASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Upf3bQ3ULL6 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Shtn1-201ENSMUST00000047511 4081 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Gm15236-201ENSMUST00000117309 379 ntBASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Gm15004-201ENSMUST00000119192 630 ntBASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Gm8343-201ENSMUST00000182705 994 ntBASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Mir7677-201ENSMUST00000184226 67 ntBASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Gm43184-201ENSMUST00000197247 542 ntBASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 9230110C19Rik-202ENSMUST00000215478 533 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC12.73□□□□□ -0.37
Upf3bQ3ULL6 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 100.8 ms