Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.78□□□□□ -0.2
Col1a1P11087 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Rab3c-202ENSMUST00000223922 2398 ntBASIC13.78□□□□□ -0.2
Col1a1P11087 Tarm1-203ENSMUST00000203821 1535 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Col1a1P11087 Ckmt1-201ENSMUST00000000317 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Col1a1P11087 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC13.78□□□□□ -0.2
Col1a1P11087 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC13.78□□□□□ -0.2
Col1a1P11087 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Srpk1-202ENSMUST00000114767 445 ntTSL 3 BASIC13.78□□□□□ -0.2
Col1a1P11087 Gm14222-201ENSMUST00000128681 575 ntTSL 2 BASIC13.78□□□□□ -0.2
Col1a1P11087 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC13.78□□□□□ -0.2
Col1a1P11087 Gm18801-201ENSMUST00000186616 536 ntBASIC13.78□□□□□ -0.2
Col1a1P11087 Gm42433-201ENSMUST00000196806 940 ntBASIC13.78□□□□□ -0.2
Col1a1P11087 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC13.78□□□□□ -0.2
Col1a1P11087 9430078K24Rik-203ENSMUST00000220293 638 ntTSL 3 BASIC13.78□□□□□ -0.2
Col1a1P11087 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Col1a1P11087 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC13.78□□□□□ -0.2
Col1a1P11087 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col1a1P11087 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Col1a1P11087 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
Col1a1P11087 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.77□□□□□ -0.2
Col1a1P11087 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col1a1P11087 Gm43570-201ENSMUST00000199951 3688 ntBASIC13.77□□□□□ -0.2
Col1a1P11087 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.77□□□□□ -0.2
Col1a1P11087 Gm14234-201ENSMUST00000119539 845 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Gm12906-201ENSMUST00000154610 441 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Prdx2-208ENSMUST00000164807 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Col1a1P11087 Gm6548-201ENSMUST00000167498 1165 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Col1a1P11087 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Gm21778-201ENSMUST00000178779 471 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Gm23694-201ENSMUST00000179335 110 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Mir6941-201ENSMUST00000184711 59 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 1700017M07Rik-201ENSMUST00000198307 940 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC13.77□□□□□ -0.21
Col1a1P11087 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Olfr314-201ENSMUST00000076393 1131 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
Col1a1P11087 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Gm43364-201ENSMUST00000196046 3274 ntBASIC13.77□□□□□ -0.21
Col1a1P11087 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC13.77□□□□□ -0.21
Col1a1P11087 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col1a1P11087 Slc13a5-206ENSMUST00000208912 1751 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Col1a1P11087 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Banf2-202ENSMUST00000110032 409 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Gm11619-201ENSMUST00000117474 237 ntBASIC13.76□□□□□ -0.21
Col1a1P11087 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC13.76□□□□□ -0.21
Col1a1P11087 Gm16030-201ENSMUST00000159098 603 ntBASIC13.76□□□□□ -0.21
Col1a1P11087 Mir7051-201ENSMUST00000184167 73 ntBASIC13.76□□□□□ -0.21
Col1a1P11087 Mmp7-201ENSMUST00000018767 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Banf2-201ENSMUST00000037722 571 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC13.76□□□□□ -0.21
Col1a1P11087 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Vmn1r38-201ENSMUST00000226457 3462 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Col1a1P11087 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col1a1P11087 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms