Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm5070-201ENSMUST00000177599 862 ntBASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Lsm7-201ENSMUST00000035775 468 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Prpf40aQ9R1C7 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm13665-201ENSMUST00000120830 528 ntBASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm38000-201ENSMUST00000192390 1215 ntBASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 AA914427-201ENSMUST00000193194 1166 ntBASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Rprl1-202ENSMUST00000198476 238 ntBASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm44651-201ENSMUST00000207343 372 ntBASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm36377-201ENSMUST00000220833 757 ntTSL 2 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Prpf40aQ9R1C7 Elp5-201ENSMUST00000108594 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Pla2g5-201ENSMUST00000030524 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm29100-201ENSMUST00000187564 4410 ntBASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm7537-201ENSMUST00000221660 1414 ntBASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Fbln2-201ENSMUST00000041544 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Rprl1-201ENSMUST00000158050 327 ntBASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm37293-201ENSMUST00000191658 295 ntBASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm45598-202ENSMUST00000210719 986 ntBASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.16□□□□□ -0.3
Prpf40aQ9R1C7 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms