Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm18499-201ENSMUST00000220808 1021 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Spink2-201ENSMUST00000065216 631 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Col1a1P11087 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col1a1P11087 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col1a1P11087 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm38089-201ENSMUST00000193585 1514 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.81□□□□□ -0.2
Col1a1P11087 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Col1a1P11087 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Col1a1P11087 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Col1a1P11087 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Oprm1-203ENSMUST00000056385 1440 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Col1a1P11087 Gm13422-201ENSMUST00000118834 504 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 H2-Bl-203ENSMUST00000183999 358 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm42655-201ENSMUST00000202782 1134 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Gm44124-201ENSMUST00000204159 472 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Gm34908-201ENSMUST00000207222 569 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 AC123694.1-201ENSMUST00000219525 644 ntTSL 5 BASIC13.8□□□□□ -0.2
Col1a1P11087 AC158392.3-201ENSMUST00000224271 1284 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Cox17-201ENSMUST00000050273 444 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
Col1a1P11087 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm19680-201ENSMUST00000095050 1513 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Stk31-201ENSMUST00000024171 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col1a1P11087 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm42941-201ENSMUST00000200347 1321 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.8□□□□□ -0.2
Col1a1P11087 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm14213-201ENSMUST00000119778 768 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Gm20414-201ENSMUST00000172918 646 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm9916-201ENSMUST00000192943 1228 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm42430-201ENSMUST00000197209 616 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Gm43610-201ENSMUST00000199117 365 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Gm29763-201ENSMUST00000205306 616 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm8894-201ENSMUST00000074642 666 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Prss55-201ENSMUST00000089338 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col1a1P11087 Gm18983-201ENSMUST00000222884 2729 ntBASIC13.8□□□□□ -0.2
Col1a1P11087 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col1a1P11087 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col1a1P11087 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC13.79□□□□□ -0.2
Col1a1P11087 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Rbfox1-202ENSMUST00000115841 1191 ntTSL 5 BASIC13.79□□□□□ -0.2
Col1a1P11087 Gm15374-201ENSMUST00000119313 844 ntBASIC13.79□□□□□ -0.2
Col1a1P11087 AC158605.1-201ENSMUST00000156803 764 ntTSL 3 BASIC13.79□□□□□ -0.2
Col1a1P11087 Slpi-202ENSMUST00000165980 488 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
Col1a1P11087 Fam83a-201ENSMUST00000050374 1189 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col1a1P11087 Vmn1r44-201ENSMUST00000089420 1108 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col1a1P11087 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms