Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AC055876.3-201ENST00000431496 288 ntBASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 KRT18P43-201ENST00000469825 1281 ntBASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AC138649.4-201ENST00000612222 287 ntBASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AL390754.1-201ENST00000619088 582 ntBASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CCDC39Q9UFE4 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AC011474.4-201ENST00000623523 2076 ntBASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 BTBD7P1-201ENST00000447253 1453 ntBASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 TSSK5P-201ENST00000423978 907 ntBASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AC093512.1-201ENST00000617969 520 ntBASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 AC004461.2-201ENST00000629517 803 ntBASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CCDC39Q9UFE4 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 AL121723.1-201ENST00000445194 1519 ntBASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 GALC-206ENST00000544807 2528 ntTSL 2 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 AC009477.1-201ENST00000452936 217 ntBASIC17.52■□□□□ 0.4
CCDC39Q9UFE4 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms