Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC13.28□□□□□ -0.28
Col6a1Q04857 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Col6a1Q04857 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Col6a1Q04857 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC13.28□□□□□ -0.28
Col6a1Q04857 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Gm11949-201ENSMUST00000117640 372 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Gm6485-201ENSMUST00000160676 439 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Gm10731-201ENSMUST00000181171 448 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 Gm45120-201ENSMUST00000208880 408 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 Gm9111-201ENSMUST00000219394 709 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 CT025553.1-201ENSMUST00000226292 299 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Col6a1Q04857 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Gm45266-201ENSMUST00000210111 2173 ntBASIC13.28□□□□□ -0.28
Col6a1Q04857 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Col6a1Q04857 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col6a1Q04857 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col6a1Q04857 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col6a1Q04857 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col6a1Q04857 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Col6a1Q04857 CT009757.3-201ENSMUST00000223367 2320 ntBASIC13.27□□□□□ -0.28
Col6a1Q04857 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Col6a1Q04857 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Col6a1Q04857 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm14219-201ENSMUST00000120414 288 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm18159-201ENSMUST00000174516 1070 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Anapc16-203ENSMUST00000182152 847 ntTSL 2 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm9645-201ENSMUST00000197131 792 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm42657-201ENSMUST00000201746 211 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 n-R5s211-201ENSMUST00000093689 119 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 F10-205ENSMUST00000152034 1449 ntTSL 5 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm37269-201ENSMUST00000193906 1891 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 Ube2q2-203ENSMUST00000122441 2081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.27□□□□□ -0.29
Col6a1Q04857 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.27□□□□□ -0.29
Col6a1Q04857 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Col6a1Q04857 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.26□□□□□ -0.29
Col6a1Q04857 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Gm26286-201ENSMUST00000104166 134 ntBASIC13.26□□□□□ -0.29
Col6a1Q04857 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC13.26□□□□□ -0.29
Col6a1Q04857 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Col6a1Q04857 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC13.26□□□□□ -0.29
Col6a1Q04857 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.26□□□□□ -0.29
Col6a1Q04857 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms