Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.35■□□□□ 0.85
Lima1Q9ERG0 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Lima1Q9ERG0 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Lima1Q9ERG0 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lima1Q9ERG0 Bfsp1-201ENSMUST00000028907 2372 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Lima1Q9ERG0 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
Lima1Q9ERG0 Gm10420-201ENSMUST00000121713 882 ntBASIC20.33■□□□□ 0.85
Lima1Q9ERG0 Cap2-205ENSMUST00000225824 1634 ntBASIC20.33■□□□□ 0.84
Lima1Q9ERG0 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Lima1Q9ERG0 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Lima1Q9ERG0 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Lima1Q9ERG0 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lima1Q9ERG0 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lima1Q9ERG0 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lima1Q9ERG0 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lima1Q9ERG0 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Lima1Q9ERG0 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Lima1Q9ERG0 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Lima1Q9ERG0 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lima1Q9ERG0 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Lima1Q9ERG0 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC20.31■□□□□ 0.84
Lima1Q9ERG0 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.3■□□□□ 0.84
Lima1Q9ERG0 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Lima1Q9ERG0 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lima1Q9ERG0 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lima1Q9ERG0 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lima1Q9ERG0 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.29■□□□□ 0.84
Lima1Q9ERG0 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Lima1Q9ERG0 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Lima1Q9ERG0 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lima1Q9ERG0 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Lima1Q9ERG0 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Lima1Q9ERG0 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lima1Q9ERG0 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Lima1Q9ERG0 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Lima1Q9ERG0 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC20.27■□□□□ 0.83
Lima1Q9ERG0 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
Lima1Q9ERG0 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lima1Q9ERG0 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lima1Q9ERG0 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lima1Q9ERG0 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lima1Q9ERG0 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Lima1Q9ERG0 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Lima1Q9ERG0 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Lima1Q9ERG0 Letm2-201ENSMUST00000079160 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.23■□□□□ 0.83
Lima1Q9ERG0 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms