Protein–RNA interactions for Protein: Q9CWM4

Pfdn1, Prefoldin subunit 1, mousemouse

Predictions only

Length 122 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pfdn1Q9CWM4 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC18.13■□□□□ 0.49
Pfdn1Q9CWM4 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pfdn1Q9CWM4 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pfdn1Q9CWM4 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pfdn1Q9CWM4 Gm22567-201ENSMUST00000175542 342 ntBASIC18.12■□□□□ 0.49
Pfdn1Q9CWM4 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Pfdn1Q9CWM4 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Pfdn1Q9CWM4 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.09■□□□□ 0.49
Pfdn1Q9CWM4 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Pfdn1Q9CWM4 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
Pfdn1Q9CWM4 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Pfdn1Q9CWM4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Pfdn1Q9CWM4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Pfdn1Q9CWM4 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Pfdn1Q9CWM4 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Pfdn1Q9CWM4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Gm42418-201ENSMUST00000182010 1831 ntBASIC18.07■□□□□ 0.48
Pfdn1Q9CWM4 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Pfdn1Q9CWM4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Fem1c-201ENSMUST00000036226 5726 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Pfdn1Q9CWM4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Pfdn1Q9CWM4 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 73.6 ms