Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Gm27011-201ENSMUST00000182352 972 ntBASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Spcs1-204ENSMUST00000226782 949 ntBASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col6a6Q8C6K9 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Gm37179-201ENSMUST00000194862 823 ntBASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col6a6Q8C6K9 Gm42642-201ENSMUST00000200683 355 ntBASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Gm7143-201ENSMUST00000222811 859 ntBASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col6a6Q8C6K9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col6a6Q8C6K9 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Gm10033-202ENSMUST00000211874 928 ntBASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col6a6Q8C6K9 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col6a6Q8C6K9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Col6a6Q8C6K9 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a6Q8C6K9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a6Q8C6K9 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Col6a6Q8C6K9 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
Col6a6Q8C6K9 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 AC099934.2-201ENSMUST00000196389 70 ntBASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 AC156953.1-201ENSMUST00000196953 70 ntBASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 AC157822.2-201ENSMUST00000200291 70 ntBASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Col6a6Q8C6K9 Gm43060-201ENSMUST00000200621 289 ntBASIC18.71■□□□□ 0.59
Col6a6Q8C6K9 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Col6a6Q8C6K9 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Gm43530-201ENSMUST00000195920 274 ntBASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 Gm42569-201ENSMUST00000200539 472 ntBASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.7■□□□□ 0.58
Col6a6Q8C6K9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Col6a6Q8C6K9 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Col6a6Q8C6K9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
Col6a6Q8C6K9 Smad6-203ENSMUST00000179458 273 ntBASIC18.68■□□□□ 0.58
Col6a6Q8C6K9 Gm40848-201ENSMUST00000221998 324 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms