Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Hmgb4Q6P8W9 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC21.56■■□□□ 1.04
Hmgb4Q6P8W9 AC153962.1-201ENSMUST00000218530 1948 ntBASIC21.56■■□□□ 1.04
Hmgb4Q6P8W9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Hmgb4Q6P8W9 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Hmgb4Q6P8W9 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Hmgb4Q6P8W9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Gm45417-201ENSMUST00000209533 758 ntBASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Hmgb4Q6P8W9 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
Hmgb4Q6P8W9 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Hmgb4Q6P8W9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Hmgb4Q6P8W9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Hmgb4Q6P8W9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.5■■□□□ 1.03
Hmgb4Q6P8W9 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.49■■□□□ 1.03
Hmgb4Q6P8W9 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Hmgb4Q6P8W9 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 AC115037.1-201ENSMUST00000223391 2173 ntBASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Hmgb4Q6P8W9 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Hmgb4Q6P8W9 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Hmgb4Q6P8W9 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Hmgb4Q6P8W9 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.45■■□□□ 1.02
Hmgb4Q6P8W9 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb4Q6P8W9 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Hmgb4Q6P8W9 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Hmgb4Q6P8W9 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Hmgb4Q6P8W9 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms