Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Clcn1Q64347 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Clcn1Q64347 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Clcn1Q64347 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Clcn1Q64347 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
Clcn1Q64347 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Clcn1Q64347 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
Clcn1Q64347 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC26.34■■□□□ 1.81
Clcn1Q64347 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
Clcn1Q64347 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC26.34■■□□□ 1.81
Clcn1Q64347 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Clcn1Q64347 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Clcn1Q64347 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
Clcn1Q64347 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC26.33■■□□□ 1.81
Clcn1Q64347 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC26.33■■□□□ 1.81
Clcn1Q64347 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 AC116713.1-201ENSMUST00000215074 430 ntBASIC26.33■■□□□ 1.81
Clcn1Q64347 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Clcn1Q64347 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Clcn1Q64347 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC26.32■■□□□ 1.8
Clcn1Q64347 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Clcn1Q64347 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC26.32■■□□□ 1.8
Clcn1Q64347 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Clcn1Q64347 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Clcn1Q64347 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Clcn1Q64347 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Clcn1Q64347 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Clcn1Q64347 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Clcn1Q64347 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
Clcn1Q64347 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC26.3■■□□□ 1.8
Clcn1Q64347 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
Clcn1Q64347 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Clcn1Q64347 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
Clcn1Q64347 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC26.29■■□□□ 1.8
Clcn1Q64347 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Clcn1Q64347 Gm10657-201ENSMUST00000193528 1031 ntBASIC26.29■■□□□ 1.8
Clcn1Q64347 Gm21168-201ENSMUST00000199646 1096 ntBASIC26.29■■□□□ 1.8
Clcn1Q64347 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Clcn1Q64347 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Clcn1Q64347 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Clcn1Q64347 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Clcn1Q64347 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Clcn1Q64347 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
Clcn1Q64347 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Clcn1Q64347 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Clcn1Q64347 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
Clcn1Q64347 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Clcn1Q64347 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Clcn1Q64347 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Clcn1Q64347 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC26.27■■□□□ 1.8
Clcn1Q64347 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
Clcn1Q64347 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Clcn1Q64347 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Clcn1Q64347 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC26.26■■□□□ 1.79
Clcn1Q64347 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Clcn1Q64347 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Clcn1Q64347 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Clcn1Q64347 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Clcn1Q64347 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC26.25■■□□□ 1.79
Clcn1Q64347 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
Clcn1Q64347 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC26.25■■□□□ 1.79
Clcn1Q64347 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Clcn1Q64347 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC26.24■■□□□ 1.79
Clcn1Q64347 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Clcn1Q64347 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
Clcn1Q64347 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Clcn1Q64347 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Clcn1Q64347 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Clcn1Q64347 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Clcn1Q64347 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Clcn1Q64347 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
Clcn1Q64347 Gm8493-201ENSMUST00000196881 489 ntBASIC26.23■■□□□ 1.79
Clcn1Q64347 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Clcn1Q64347 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Clcn1Q64347 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Clcn1Q64347 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC26.22■■□□□ 1.79
Clcn1Q64347 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
Clcn1Q64347 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Clcn1Q64347 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
Clcn1Q64347 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Clcn1Q64347 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Clcn1Q64347 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Clcn1Q64347 Gm29257-201ENSMUST00000186115 639 ntBASIC26.21■■□□□ 1.79
Clcn1Q64347 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Clcn1Q64347 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
Clcn1Q64347 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Clcn1Q64347 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
Clcn1Q64347 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC26.2■■□□□ 1.78
Clcn1Q64347 Gm12251-201ENSMUST00000117893 792 ntBASIC26.2■■□□□ 1.78
Clcn1Q64347 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Clcn1Q64347 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC26.2■■□□□ 1.78
Clcn1Q64347 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
Clcn1Q64347 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Retrieved 100 of 76,532 protein–RNA pairs in 321.7 ms