Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.96■□□□□ 0.95
Six4Q61321 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Six4Q61321 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
Six4Q61321 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Six4Q61321 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.96■□□□□ 0.95
Six4Q61321 Gm6277-202ENSMUST00000224036 2779 ntBASIC20.96■□□□□ 0.95
Six4Q61321 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
Six4Q61321 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.95■□□□□ 0.94
Six4Q61321 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Six4Q61321 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Six4Q61321 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Six4Q61321 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Six4Q61321 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
Six4Q61321 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Six4Q61321 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Six4Q61321 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Six4Q61321 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Six4Q61321 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.94■□□□□ 0.94
Six4Q61321 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC20.94■□□□□ 0.94
Six4Q61321 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Six4Q61321 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Six4Q61321 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Six4Q61321 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Six4Q61321 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Six4Q61321 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Six4Q61321 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.93■□□□□ 0.94
Six4Q61321 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Six4Q61321 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Six4Q61321 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Six4Q61321 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Six4Q61321 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC20.91■□□□□ 0.94
Six4Q61321 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Six4Q61321 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Six4Q61321 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Six4Q61321 Gm22238-201ENSMUST00000175222 88 ntBASIC20.9■□□□□ 0.94
Six4Q61321 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.9■□□□□ 0.94
Six4Q61321 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Six4Q61321 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Six4Q61321 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Six4Q61321 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Six4Q61321 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Six4Q61321 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Six4Q61321 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.89■□□□□ 0.93
Six4Q61321 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Six4Q61321 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Six4Q61321 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Six4Q61321 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Six4Q61321 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Six4Q61321 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six4Q61321 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC20.88■□□□□ 0.93
Six4Q61321 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Six4Q61321 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Six4Q61321 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.87■□□□□ 0.93
Six4Q61321 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Six4Q61321 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Six4Q61321 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Six4Q61321 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Six4Q61321 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Six4Q61321 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Six4Q61321 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Six4Q61321 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Six4Q61321 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Six4Q61321 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Six4Q61321 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Six4Q61321 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.85■□□□□ 0.93
Six4Q61321 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
Six4Q61321 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
Six4Q61321 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.84■□□□□ 0.93
Six4Q61321 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.84■□□□□ 0.93
Six4Q61321 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Six4Q61321 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.84■□□□□ 0.93
Six4Q61321 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
Six4Q61321 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Six4Q61321 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Six4Q61321 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Six4Q61321 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Six4Q61321 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms