Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.79
Col28a1Q2UY11 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Col28a1Q2UY11 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Col28a1Q2UY11 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Col28a1Q2UY11 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Gm5522-201ENSMUST00000189483 1242 ntBASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Col28a1Q2UY11 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.91■□□□□ 0.78
Col28a1Q2UY11 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC19.91■□□□□ 0.78
Col28a1Q2UY11 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Col28a1Q2UY11 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC19.9■□□□□ 0.78
Col28a1Q2UY11 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Col28a1Q2UY11 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Col28a1Q2UY11 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 Rpf2-201ENSMUST00000045114 1853 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Col28a1Q2UY11 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Col28a1Q2UY11 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms