Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Cdx1P18111 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.45■□□□□ 0.22
Cdx1P18111 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cdx1P18111 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC16.44■□□□□ 0.22
Cdx1P18111 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC16.44■□□□□ 0.22
Cdx1P18111 AC151971.4-201ENSMUST00000214717 704 ntBASIC16.44■□□□□ 0.22
Cdx1P18111 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
Cdx1P18111 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Cdx1P18111 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx1P18111 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cdx1P18111 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC16.43■□□□□ 0.22
Cdx1P18111 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Gm5921-201ENSMUST00000075898 882 ntBASIC16.43■□□□□ 0.22
Cdx1P18111 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Cdx1P18111 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cdx1P18111 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cdx1P18111 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdx1P18111 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC16.42■□□□□ 0.22
Cdx1P18111 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cdx1P18111 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdx1P18111 AC115037.1-201ENSMUST00000223391 2173 ntBASIC16.42■□□□□ 0.22
Cdx1P18111 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Cdx1P18111 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdx1P18111 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdx1P18111 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cdx1P18111 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdx1P18111 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdx1P18111 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdx1P18111 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC16.41■□□□□ 0.22
Cdx1P18111 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cdx1P18111 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Cdx1P18111 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Cdx1P18111 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Cdx1P18111 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
Cdx1P18111 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Cdx1P18111 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Cdx1P18111 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Cdx1P18111 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC16.39■□□□□ 0.21
Cdx1P18111 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC16.39■□□□□ 0.21
Cdx1P18111 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Cdx1P18111 Gm5812-201ENSMUST00000061073 957 ntBASIC16.39■□□□□ 0.21
Cdx1P18111 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC16.39■□□□□ 0.21
Cdx1P18111 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Cdx1P18111 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Cdx1P18111 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Cdx1P18111 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Cdx1P18111 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
Cdx1P18111 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 Gm44428-201ENSMUST00000204474 874 ntBASIC16.38■□□□□ 0.21
Cdx1P18111 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Cdx1P18111 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Cdx1P18111 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms