Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cacna1bO55017 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Cacna1bO55017 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Cacna1bO55017 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cacna1bO55017 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Cacna1bO55017 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cacna1bO55017 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cacna1bO55017 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Cacna1bO55017 Gm10129-202ENSMUST00000193100 1316 ntBASIC20.09■□□□□ 0.81
Cacna1bO55017 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.09■□□□□ 0.81
Cacna1bO55017 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
Cacna1bO55017 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Gm42569-201ENSMUST00000200539 472 ntBASIC20.09■□□□□ 0.81
Cacna1bO55017 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Cacna1bO55017 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cacna1bO55017 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC20.08■□□□□ 0.81
Cacna1bO55017 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.08■□□□□ 0.81
Cacna1bO55017 Gm43060-201ENSMUST00000200621 289 ntBASIC20.08■□□□□ 0.81
Cacna1bO55017 Gm10033-202ENSMUST00000211874 928 ntBASIC20.08■□□□□ 0.81
Cacna1bO55017 Spcs1-204ENSMUST00000226782 949 ntBASIC20.08■□□□□ 0.81
Cacna1bO55017 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC20.08■□□□□ 0.8
Cacna1bO55017 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Cacna1bO55017 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20.07■□□□□ 0.8
Cacna1bO55017 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Cacna1bO55017 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cacna1bO55017 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.07■□□□□ 0.8
Cacna1bO55017 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.07■□□□□ 0.8
Cacna1bO55017 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.07■□□□□ 0.8
Cacna1bO55017 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC20.06■□□□□ 0.8
Cacna1bO55017 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cacna1bO55017 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC20.06■□□□□ 0.8
Cacna1bO55017 Gm7143-201ENSMUST00000222811 859 ntBASIC20.06■□□□□ 0.8
Cacna1bO55017 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cacna1bO55017 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cacna1bO55017 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cacna1bO55017 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cacna1bO55017 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cacna1bO55017 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cacna1bO55017 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Cacna1bO55017 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Cacna1bO55017 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Cacna1bO55017 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Cacna1bO55017 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cacna1bO55017 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.03■□□□□ 0.8
Cacna1bO55017 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Cacna1bO55017 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cacna1bO55017 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cacna1bO55017 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cacna1bO55017 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cacna1bO55017 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cacna1bO55017 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cacna1bO55017 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cacna1bO55017 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cacna1bO55017 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Cacna1bO55017 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Cacna1bO55017 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC20.02■□□□□ 0.79
Cacna1bO55017 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Cacna1bO55017 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cacna1bO55017 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
Cacna1bO55017 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cacna1bO55017 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.01■□□□□ 0.79
Cacna1bO55017 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cacna1bO55017 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cacna1bO55017 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Cacna1bO55017 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cacna1bO55017 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cacna1bO55017 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20■□□□□ 0.79
Cacna1bO55017 CT025689.6-201ENSMUST00000224991 1104 ntBASIC20■□□□□ 0.79
Cacna1bO55017 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC20■□□□□ 0.79
Cacna1bO55017 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC20■□□□□ 0.79
Cacna1bO55017 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Cacna1bO55017 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Cacna1bO55017 Smad6-203ENSMUST00000179458 273 ntBASIC19.99■□□□□ 0.79
Cacna1bO55017 AV356131-201ENSMUST00000206201 750 ntBASIC19.99■□□□□ 0.79
Cacna1bO55017 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC19.99■□□□□ 0.79
Cacna1bO55017 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.99■□□□□ 0.79
Cacna1bO55017 Gm40848-201ENSMUST00000221998 324 ntBASIC19.99■□□□□ 0.79
Cacna1bO55017 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cacna1bO55017 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cacna1bO55017 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.98■□□□□ 0.79
Cacna1bO55017 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.98■□□□□ 0.79
Cacna1bO55017 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
Cacna1bO55017 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cacna1bO55017 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cacna1bO55017 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cacna1bO55017 Gm6085-201ENSMUST00000182774 1470 ntBASIC19.98■□□□□ 0.79
Cacna1bO55017 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Cacna1bO55017 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Cacna1bO55017 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms