Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Pcdhgb8A0A140LI48 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Pcdhgb8A0A140LI48 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Pcdhgb8A0A140LI48 6430628N08Rik-201ENSMUST00000132221 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Pcdhgb8A0A140LI48 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Pcdhgb8A0A140LI48 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Pcdhgb8A0A140LI48 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Pcdhgb8A0A140LI48 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Pcdhgb8A0A140LI48 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC18.49■□□□□ 0.55
Pcdhgb8A0A140LI48 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Pcdhgb8A0A140LI48 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.49■□□□□ 0.55
Pcdhgb8A0A140LI48 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Pcdhgb8A0A140LI48 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Pcdhgb8A0A140LI48 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Pcdhgb8A0A140LI48 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Gtf2h2-202ENSMUST00000066984 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Pcdhgb8A0A140LI48 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Pcdhgb8A0A140LI48 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Pcdhgb8A0A140LI48 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Pcdhgb8A0A140LI48 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Pcdhgb8A0A140LI48 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Pcdhgb8A0A140LI48 Rax-201ENSMUST00000025396 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Lrrc10b-201ENSMUST00000171400 2077 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Pcdhgb8A0A140LI48 Msc-201ENSMUST00000027062 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Golph3-202ENSMUST00000226517 2359 ntBASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Pcdhgb8A0A140LI48 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm42418-201ENSMUST00000182010 1831 ntBASIC18.42■□□□□ 0.54
Pcdhgb8A0A140LI48 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Pcdhgb8A0A140LI48 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Pcdhgb8A0A140LI48 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms