Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 1200007C13Rik-201ENSMUST00000143649 2455 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Gm4935-201ENSMUST00000221316 1198 ntBASIC11.92□□□□□ -0.5
Lima1Q9ERG0 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Sypl2-201ENSMUST00000141387 4090 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 AC124397.2-201ENSMUST00000225575 2215 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm43760-201ENSMUST00000202120 3015 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm25261-201ENSMUST00000157416 134 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm6222-202ENSMUST00000182143 629 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm18584-201ENSMUST00000203098 964 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 n-R5s195-201ENSMUST00000082891 119 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Taf9b-201ENSMUST00000055497 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gm45428-201ENSMUST00000209619 1789 ntBASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Steap3-201ENSMUST00000112639 2931 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Gpcpd1-205ENSMUST00000110142 3703 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Ube2v1-202ENSMUST00000109207 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Mbd1-202ENSMUST00000224047 2838 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Ccnb1-201ENSMUST00000072119 2489 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lima1Q9ERG0 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Gm13492-201ENSMUST00000119772 665 ntBASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Lima1Q9ERG0 Polm-201ENSMUST00000020767 2924 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms