Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm26361-201ENSMUST00000158868 186 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm43365-201ENSMUST00000196522 2106 ntBASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.94□□□□□ -0.34
Upf3bQ3ULL6 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Gm43051-201ENSMUST00000201096 2678 ntBASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Gm4760-201ENSMUST00000119663 1030 ntBASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Gm5869-201ENSMUST00000200248 1257 ntBASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Treml1-205ENSMUST00000225849 974 ntAPPRIS ALT2 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Gm37131-201ENSMUST00000192502 1561 ntBASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Upf3bQ3ULL6 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Mast4-207ENSMUST00000167058 10636 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Mir877-201ENSMUST00000104738 85 ntBASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm45224-201ENSMUST00000208203 414 ntBASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Fxyd1-202ENSMUST00000071697 522 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Upf3bQ3ULL6 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms