Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC11.62□□□□□ -0.55
Sox3P53784 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC11.62□□□□□ -0.55
Sox3P53784 Gm5732-201ENSMUST00000182596 1007 ntBASIC11.62□□□□□ -0.55
Sox3P53784 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC11.62□□□□□ -0.55
Sox3P53784 Gm38210-201ENSMUST00000191944 809 ntBASIC11.62□□□□□ -0.55
Sox3P53784 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.62□□□□□ -0.55
Sox3P53784 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Gm7224-201ENSMUST00000121359 2066 ntBASIC11.62□□□□□ -0.55
Sox3P53784 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC11.62□□□□□ -0.55
Sox3P53784 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Sox3P53784 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Sox3P53784 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.62□□□□□ -0.55
Sox3P53784 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
Sox3P53784 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
Sox3P53784 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sox3P53784 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 AC154262.2-202ENSMUST00000225158 1331 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Sox3P53784 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC11.61□□□□□ -0.55
Sox3P53784 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Sox3P53784 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Adamtsl1-204ENSMUST00000120678 977 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Gm11450-201ENSMUST00000121144 333 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Gm14460-201ENSMUST00000121511 639 ntBASIC11.61□□□□□ -0.55
Sox3P53784 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Gm17391-201ENSMUST00000171036 126 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Gm17812-201ENSMUST00000204935 318 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC11.61□□□□□ -0.55
Sox3P53784 Gm44772-201ENSMUST00000207623 1191 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Gm6458-201ENSMUST00000211573 635 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.61□□□□□ -0.55
Sox3P53784 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC11.61□□□□□ -0.55
Sox3P53784 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.61□□□□□ -0.55
Sox3P53784 Gzmn-202ENSMUST00000225535 989 ntBASIC11.61□□□□□ -0.55
Sox3P53784 AC138604.1-201ENSMUST00000226969 739 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC11.61□□□□□ -0.55
Sox3P53784 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Sox3P53784 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Sox3P53784 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Sox3P53784 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC11.61□□□□□ -0.55
Sox3P53784 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Sox3P53784 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sox3P53784 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.6□□□□□ -0.55
Sox3P53784 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Sox3P53784 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC11.6□□□□□ -0.55
Sox3P53784 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Sox3P53784 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.6□□□□□ -0.55
Sox3P53784 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC11.6□□□□□ -0.55
Sox3P53784 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC11.6□□□□□ -0.55
Sox3P53784 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 Gm7666-201ENSMUST00000146631 819 ntBASIC11.6□□□□□ -0.55
Sox3P53784 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sox3P53784 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC11.6□□□□□ -0.55
Sox3P53784 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.6□□□□□ -0.55
Sox3P53784 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.6□□□□□ -0.55
Sox3P53784 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC11.6□□□□□ -0.55
Sox3P53784 Gm44124-201ENSMUST00000204159 472 ntBASIC11.6□□□□□ -0.55
Sox3P53784 Gm43916-201ENSMUST00000205062 967 ntBASIC11.6□□□□□ -0.55
Sox3P53784 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
Sox3P53784 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC11.6□□□□□ -0.55
Sox3P53784 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC11.6□□□□□ -0.55
Sox3P53784 Aprt-ps-201ENSMUST00000212311 505 ntBASIC11.6□□□□□ -0.55
Sox3P53784 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms