Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Gm3150-201ENSMUST00000166418 204 ntBASIC12.76□□□□□ -0.37
Clp1Q99LI9 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Gm43852-201ENSMUST00000202098 917 ntBASIC12.76□□□□□ -0.37
Clp1Q99LI9 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Gm9661-201ENSMUST00000221611 1122 ntBASIC12.76□□□□□ -0.37
Clp1Q99LI9 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 n-R5s211-201ENSMUST00000093689 119 ntBASIC12.76□□□□□ -0.37
Clp1Q99LI9 Gm10775-201ENSMUST00000099425 1203 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Clp1Q99LI9 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.76□□□□□ -0.37
Clp1Q99LI9 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Clp1Q99LI9 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Meig1-202ENSMUST00000115081 421 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm15610-201ENSMUST00000120584 195 ntBASIC12.75□□□□□ -0.37
Clp1Q99LI9 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm13091-201ENSMUST00000128800 469 ntTSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm13703-201ENSMUST00000150705 449 ntTSL 2 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm5298-201ENSMUST00000201122 892 ntBASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm6108-201ENSMUST00000208365 367 ntBASIC12.75□□□□□ -0.37
Clp1Q99LI9 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 AC102569.1-204ENSMUST00000222816 793 ntTSL 3 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 AC112945.1-201ENSMUST00000226413 514 ntBASIC12.75□□□□□ -0.37
Clp1Q99LI9 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Clp1Q99LI9 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm37859-201ENSMUST00000195529 2173 ntBASIC12.74□□□□□ -0.37
Clp1Q99LI9 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm45638-201ENSMUST00000211507 2878 ntBASIC12.74□□□□□ -0.37
Clp1Q99LI9 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Smim5-202ENSMUST00000142089 685 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm2449-201ENSMUST00000180676 585 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm9034-201ENSMUST00000182071 1005 ntBASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm8502-201ENSMUST00000185708 901 ntBASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm21147-201ENSMUST00000186046 913 ntBASIC12.74□□□□□ -0.37
Clp1Q99LI9 Gm8531-201ENSMUST00000188319 893 ntBASIC12.74□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms