Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Cdc73-201ENSMUST00000018337 11586 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Gm4909-201ENSMUST00000118749 794 ntBASIC14.25□□□□□ -0.13
Trim56Q80VI1 Gm13323-201ENSMUST00000120245 1151 ntBASIC14.25□□□□□ -0.13
Trim56Q80VI1 Gm18038-201ENSMUST00000197900 485 ntBASIC14.25□□□□□ -0.13
Trim56Q80VI1 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Gm18730-201ENSMUST00000218038 343 ntBASIC14.25□□□□□ -0.13
Trim56Q80VI1 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Nudt21-201ENSMUST00000034204 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trim56Q80VI1 AC129931.1-201ENSMUST00000228865 1861 ntBASIC14.25□□□□□ -0.13
Trim56Q80VI1 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC14.25□□□□□ -0.13
Trim56Q80VI1 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Gm43807-201ENSMUST00000200678 1781 ntBASIC14.24□□□□□ -0.13
Trim56Q80VI1 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Gm17040-202ENSMUST00000170597 889 ntBASIC14.24□□□□□ -0.13
Trim56Q80VI1 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 AU022133-201ENSMUST00000200601 873 ntBASIC14.24□□□□□ -0.13
Trim56Q80VI1 Rps4l-202ENSMUST00000204242 789 ntBASIC14.24□□□□□ -0.13
Trim56Q80VI1 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim56Q80VI1 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Myh14-203ENSMUST00000107900 6400 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Cog3-203ENSMUST00000227473 4197 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm23596-201ENSMUST00000104304 132 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm8343-201ENSMUST00000182705 994 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm4157-201ENSMUST00000211647 679 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm9797-202ENSMUST00000218003 294 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Mettl6-204ENSMUST00000227595 1027 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Trim56Q80VI1 Gm5705-201ENSMUST00000066241 711 ntBASIC14.23□□□□□ -0.13
Trim56Q80VI1 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms