Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm8741-201ENSMUST00000174736 384 ntBASIC12.21□□□□□ -0.45
Six4Q61321 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC12.21□□□□□ -0.45
Six4Q61321 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 Orc5-201ENSMUST00000030872 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC12.21□□□□□ -0.45
Six4Q61321 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.21□□□□□ -0.45
Six4Q61321 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Six4Q61321 AC130671.2-201ENSMUST00000227224 1621 ntBASIC12.21□□□□□ -0.46
Six4Q61321 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC12.21□□□□□ -0.46
Six4Q61321 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.21□□□□□ -0.46
Six4Q61321 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Six4Q61321 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.21□□□□□ -0.46
Six4Q61321 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.2□□□□□ -0.46
Six4Q61321 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Six4Q61321 Gm14208-201ENSMUST00000119645 678 ntBASIC12.2□□□□□ -0.46
Six4Q61321 Gm12036-201ENSMUST00000120008 530 ntBASIC12.2□□□□□ -0.46
Six4Q61321 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC12.2□□□□□ -0.46
Six4Q61321 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC12.2□□□□□ -0.46
Six4Q61321 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC12.2□□□□□ -0.46
Six4Q61321 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.2□□□□□ -0.46
Six4Q61321 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC12.2□□□□□ -0.46
Six4Q61321 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC12.2□□□□□ -0.46
Six4Q61321 Gm21027-201ENSMUST00000219300 1236 ntBASIC12.2□□□□□ -0.46
Six4Q61321 Olfr1347-205ENSMUST00000220413 964 ntBASIC12.2□□□□□ -0.46
Six4Q61321 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Six4Q61321 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC12.2□□□□□ -0.46
Six4Q61321 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Six4Q61321 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC12.2□□□□□ -0.46
Six4Q61321 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC12.2□□□□□ -0.46
Six4Q61321 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.2□□□□□ -0.46
Six4Q61321 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Six4Q61321 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.2□□□□□ -0.46
Six4Q61321 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Six4Q61321 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.19□□□□□ -0.46
Six4Q61321 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC12.19□□□□□ -0.46
Six4Q61321 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Gm15610-201ENSMUST00000120584 195 ntBASIC12.19□□□□□ -0.46
Six4Q61321 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Six4Q61321 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Six4Q61321 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Gm45433-201ENSMUST00000209386 247 ntBASIC12.19□□□□□ -0.46
Six4Q61321 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC12.19□□□□□ -0.46
Six4Q61321 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Six4Q61321 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Six4Q61321 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Six4Q61321 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Six4Q61321 Ccdc85a-202ENSMUST00000093253 5431 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 47 ms