Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Tmem205-203ENSMUST00000213698 705 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 AC123665.1-201ENSMUST00000228204 438 ntBASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Gm45495-201ENSMUST00000200940 1700 ntBASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Upf3bQ3ULL6 Creb3l2-201ENSMUST00000041093 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Hsd17b10-202ENSMUST00000112617 992 ntTSL 5 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gm12012-201ENSMUST00000118857 1066 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gm26083-201ENSMUST00000157904 193 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gm32999-201ENSMUST00000192693 562 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gm42599-201ENSMUST00000201308 469 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gm45598-202ENSMUST00000210719 986 ntBASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gm9843-201ENSMUST00000052867 504 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3bQ3ULL6 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Gm13665-201ENSMUST00000120830 528 ntBASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Gm43908-201ENSMUST00000205074 1472 ntBASIC12.97□□□□□ -0.33
Upf3bQ3ULL6 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 57 ms