Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col18a1P39061 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col18a1P39061 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col18a1P39061 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col18a1P39061 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Col18a1P39061 Slc19a1-209ENSMUST00000144234 2309 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col18a1P39061 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC15.68■□□□□ 0.1
Col18a1P39061 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Gm20773-202ENSMUST00000193306 1341 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC15.68■□□□□ 0.1
Col18a1P39061 Gm17226-201ENSMUST00000166637 780 ntTSL 3 BASIC15.68■□□□□ 0.1
Col18a1P39061 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Gm21964-201ENSMUST00000178785 936 ntTSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Ighv5-8-202ENSMUST00000191967 337 ntBASIC15.68■□□□□ 0.1
Col18a1P39061 Gm43244-201ENSMUST00000196994 1285 ntBASIC15.68■□□□□ 0.1
Col18a1P39061 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Nnmt-201ENSMUST00000034808 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col18a1P39061 AC241621.2-201ENSMUST00000223991 2151 ntBASIC15.68■□□□□ 0.1
Col18a1P39061 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC15.68■□□□□ 0.1
Col18a1P39061 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Osgin1-201ENSMUST00000098365 1959 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Gm14071-201ENSMUST00000117817 509 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Gm15815-201ENSMUST00000120569 255 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Gm25343-201ENSMUST00000157460 107 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Gm26174-201ENSMUST00000158415 219 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Gm4775-201ENSMUST00000169588 402 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Gm6612-201ENSMUST00000170777 395 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
Col18a1P39061 Mir99ahg-209ENSMUST00000182820 835 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Gm19013-201ENSMUST00000183895 1222 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Gm19014-201ENSMUST00000184828 1189 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Gm43564-201ENSMUST00000196185 211 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Abracl-203ENSMUST00000218994 425 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Col18a1P39061 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Zbtb20-201ENSMUST00000079441 3086 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Kcnk16-202ENSMUST00000225596 2127 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Gatb-203ENSMUST00000107674 1980 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Nudt13-203ENSMUST00000223663 1633 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Col18a1P39061 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Atp5g3-202ENSMUST00000111996 723 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
Col18a1P39061 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Rhoc-205ENSMUST00000196817 877 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
Col18a1P39061 Gm42751-201ENSMUST00000198065 559 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Gm8768-201ENSMUST00000220020 826 ntBASIC15.67■□□□□ 0.1
Col18a1P39061 2010109A12Rik-201ENSMUST00000031330 549 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Olfr71-201ENSMUST00000055401 939 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
Col18a1P39061 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC15.67■□□□□ 0.1
Col18a1P39061 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col18a1P39061 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Col18a1P39061 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 F10-201ENSMUST00000033821 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC15.66■□□□□ 0.1
Col18a1P39061 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Col18a1P39061 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms