Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Gm37105-201ENSMUST00000192251 2085 ntBASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Cic-212ENSMUST00000169266 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Usp39Q3TIX9 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm43075-201ENSMUST00000198613 3905 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm9083-201ENSMUST00000120423 819 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm11793-201ENSMUST00000120433 981 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm18827-201ENSMUST00000188341 790 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm37466-201ENSMUST00000195692 652 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm43758-201ENSMUST00000199500 367 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Olfr284-202ENSMUST00000206647 966 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm10608-202ENSMUST00000213924 676 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 AC093022.1-201ENSMUST00000226949 1072 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Gm43579-201ENSMUST00000202387 1307 ntBASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Usp39Q3TIX9 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Adcy8-201ENSMUST00000023007 6990 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm14381-201ENSMUST00000122105 414 ntBASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm8738-201ENSMUST00000172606 329 ntBASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm6222-202ENSMUST00000182143 629 ntBASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm29199-201ENSMUST00000187766 775 ntBASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm44405-201ENSMUST00000198952 126 ntBASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Cacna1s-201ENSMUST00000112064 6251 ntAPPRIS P3 TSL 2 BASIC11.8□□□□□ -0.52
Usp39Q3TIX9 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms