Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Nup88Q8CEC0 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm43174-201ENSMUST00000195914 2445 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm23270-201ENSMUST00000104055 131 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm12012-201ENSMUST00000118857 1066 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm8908-201ENSMUST00000121633 1024 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Mir5132-201ENSMUST00000175166 71 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm6652-201ENSMUST00000186414 1070 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm5904-201ENSMUST00000210286 865 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Gm18615-201ENSMUST00000222919 1031 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 AC165260.3-202ENSMUST00000224550 1031 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Nup88Q8CEC0 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm44260-201ENSMUST00000204946 2094 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm19221-201ENSMUST00000221827 1477 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm14132-201ENSMUST00000117188 1719 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm11930-201ENSMUST00000117788 190 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm14017-201ENSMUST00000121934 386 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm16296-201ENSMUST00000159905 325 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm16505-201ENSMUST00000179981 232 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm42599-201ENSMUST00000201308 469 ntBASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Nup88Q8CEC0 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms