Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Cecr2-202ENSMUST00000112686 9212 ntAPPRIS P2 TSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Npc1-201ENSMUST00000025279 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Six4Q61321 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
Six4Q61321 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
Six4Q61321 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 Gm4857-201ENSMUST00000192718 785 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Gm44262-201ENSMUST00000204969 372 ntBASIC12.28□□□□□ -0.44
Six4Q61321 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC12.28□□□□□ -0.44
Six4Q61321 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC12.28□□□□□ -0.44
Six4Q61321 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 AC153954.1-201ENSMUST00000216959 255 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Six4Q61321 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Crry-ps-201ENSMUST00000079090 1309 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Six4Q61321 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.28□□□□□ -0.44
Six4Q61321 AC157950.1-201ENSMUST00000217561 2168 ntBASIC12.28□□□□□ -0.44
Six4Q61321 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Six4Q61321 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Six4Q61321 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Six4Q61321 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.27□□□□□ -0.44
Six4Q61321 AC123619.2-202ENSMUST00000225097 1568 ntBASIC12.27□□□□□ -0.44
Six4Q61321 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Six4Q61321 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Six4Q61321 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.27□□□□□ -0.45
Six4Q61321 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.27□□□□□ -0.45
Six4Q61321 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Gm26361-201ENSMUST00000158868 186 ntBASIC12.27□□□□□ -0.45
Six4Q61321 Gm5706-201ENSMUST00000181525 993 ntBASIC12.27□□□□□ -0.45
Six4Q61321 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC12.27□□□□□ -0.45
Six4Q61321 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Gm9678-201ENSMUST00000198979 1149 ntBASIC12.27□□□□□ -0.45
Six4Q61321 Gm17931-201ENSMUST00000208132 634 ntBASIC12.27□□□□□ -0.45
Six4Q61321 Gm44710-201ENSMUST00000208885 471 ntTSL 2 BASIC12.27□□□□□ -0.45
Six4Q61321 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.27□□□□□ -0.45
Six4Q61321 Gm7293-201ENSMUST00000216682 1007 ntBASIC12.27□□□□□ -0.45
Six4Q61321 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC12.27□□□□□ -0.45
Six4Q61321 AC159205.5-202ENSMUST00000224849 386 ntBASIC12.27□□□□□ -0.45
Six4Q61321 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Calca-201ENSMUST00000032906 994 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.27□□□□□ -0.45
Six4Q61321 Apopt1-203ENSMUST00000162316 3107 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Six4Q61321 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC12.26□□□□□ -0.45
Six4Q61321 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Six4Q61321 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms