Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm14132-201ENSMUST00000117188 1719 ntBASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Mir6420-201ENSMUST00000185032 102 ntBASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm19994-201ENSMUST00000217086 586 ntBASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 CT025624.1-201ENSMUST00000224007 2700 ntBASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Gm18782-201ENSMUST00000209023 1399 ntBASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3bQ3ULL6 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Klf11-201ENSMUST00000020982 4086 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm14019-201ENSMUST00000131514 403 ntTSL 3 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm6963-201ENSMUST00000147879 379 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm25668-201ENSMUST00000157700 129 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Rprl1-201ENSMUST00000158050 327 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm17376-201ENSMUST00000166016 84 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm27390-201ENSMUST00000184516 176 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm9230-201ENSMUST00000188228 532 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ighv1-62-201ENSMUST00000193406 350 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm13097-201ENSMUST00000210722 397 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 AC154252.2-201ENSMUST00000223593 767 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Gzmn-202ENSMUST00000225535 989 ntBASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ttbk2-203ENSMUST00000085840 11152 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3bQ3ULL6 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms