Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Il33-201ENSMUST00000025724 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm13347-201ENSMUST00000120298 1353 ntBASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Gm5308-201ENSMUST00000196752 1354 ntBASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC16.2■□□□□ 0.18
Scn4aQ9ER60 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Focad-202ENSMUST00000107147 1177 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm6471-202ENSMUST00000148734 587 ntTSL 2 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm16080-201ENSMUST00000152128 692 ntTSL 3 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm24992-201ENSMUST00000157412 130 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Tstd1-201ENSMUST00000171362 551 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm7929-201ENSMUST00000178711 624 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm3015-202ENSMUST00000179803 624 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm5178-201ENSMUST00000219380 898 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Fbxl19-202ENSMUST00000186116 3641 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm8038-201ENSMUST00000164674 2044 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm38391-201ENSMUST00000191720 4069 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Mir1249-201ENSMUST00000116791 98 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm4705-201ENSMUST00000177415 354 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm5808-201ENSMUST00000178090 357 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm36980-201ENSMUST00000195643 622 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm5982-201ENSMUST00000196234 512 ntBASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Gm45388-201ENSMUST00000209922 1132 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Scn4aQ9ER60 Sdcbp-204ENSMUST00000108374 1803 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Upp1-202ENSMUST00000101525 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Gm22661-201ENSMUST00000104192 132 ntBASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Gm8111-201ENSMUST00000117659 987 ntBASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Ghrl-204ENSMUST00000203770 891 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Ghrl-205ENSMUST00000204163 447 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 AC134601.2-201ENSMUST00000221071 130 ntBASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Gm5292-201ENSMUST00000073317 580 ntBASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Ccdc130-201ENSMUST00000005120 1441 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Scn4aQ9ER60 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm11544-201ENSMUST00000120215 382 ntBASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm20483-201ENSMUST00000173162 851 ntTSL 2 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm5254-201ENSMUST00000188353 977 ntBASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Ighv5-1-201ENSMUST00000193324 353 ntBASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm37688-201ENSMUST00000195195 465 ntBASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gpx4-ps2-201ENSMUST00000214811 555 ntBASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Gm5639-201ENSMUST00000122305 2403 ntBASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Psmf1-202ENSMUST00000109869 1384 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Scn4aQ9ER60 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms