Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sh3rf1Q69ZI1 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Smtn-204ENSMUST00000110011 3020 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm13297-201ENSMUST00000120205 934 ntBASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm28693-202ENSMUST00000190758 331 ntBASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm37259-201ENSMUST00000193903 849 ntBASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm9176-201ENSMUST00000219955 1120 ntBASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Top2b-201ENSMUST00000017629 10335 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sh3rf1Q69ZI1 Gm45053-201ENSMUST00000206112 2499 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Gm11637-201ENSMUST00000120601 592 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Mospd4-201ENSMUST00000180618 576 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Gm7046-201ENSMUST00000221351 977 ntBASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
Sh3rf1Q69ZI1 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.43
Sh3rf1Q69ZI1 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
Sh3rf1Q69ZI1 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
Sh3rf1Q69ZI1 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.43
Sh3rf1Q69ZI1 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Sh3rf1Q69ZI1 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms