Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 AC126444.1-201ENSMUST00000225938 1768 ntBASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm12015-201ENSMUST00000117065 843 ntBASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm8885-201ENSMUST00000189382 598 ntBASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 AC161537.1-201ENSMUST00000226199 1015 ntBASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Upf3bQ3ULL6 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm14644-201ENSMUST00000116671 647 ntBASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm5070-201ENSMUST00000177599 862 ntBASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 AC154171.1-201ENSMUST00000224610 643 ntBASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Arhgap12-211ENSMUST00000182383 2500 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Upf3bQ3ULL6 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms