Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
Prpf40aQ9R1C7 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Gm8093-201ENSMUST00000128935 1892 ntBASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
Prpf40aQ9R1C7 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Gm5522-201ENSMUST00000189483 1242 ntBASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
Prpf40aQ9R1C7 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
Prpf40aQ9R1C7 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC22.79■■□□□ 1.24
Prpf40aQ9R1C7 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Gm18755-201ENSMUST00000218030 1099 ntBASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
Prpf40aQ9R1C7 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Prpf40aQ9R1C7 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
Prpf40aQ9R1C7 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Prpf40aQ9R1C7 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Prpf40aQ9R1C7 Gm15546-201ENSMUST00000122095 826 ntBASIC22.77■■□□□ 1.24
Prpf40aQ9R1C7 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Prpf40aQ9R1C7 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Prpf40aQ9R1C7 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Prpf40aQ9R1C7 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
Prpf40aQ9R1C7 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
Prpf40aQ9R1C7 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Prpf40aQ9R1C7 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Gm20634-201ENSMUST00000090779 2956 ntBASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
Prpf40aQ9R1C7 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Prpf40aQ9R1C7 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC22.73■■□□□ 1.23
Prpf40aQ9R1C7 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40aQ9R1C7 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40aQ9R1C7 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40aQ9R1C7 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Prpf40aQ9R1C7 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Gm15820-201ENSMUST00000201566 728 ntBASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Prpf40aQ9R1C7 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC22.71■■□□□ 1.23
Prpf40aQ9R1C7 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40aQ9R1C7 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40aQ9R1C7 Gm43006-201ENSMUST00000197702 1602 ntBASIC22.71■■□□□ 1.23
Prpf40aQ9R1C7 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40aQ9R1C7 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
Prpf40aQ9R1C7 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC22.7■■□□□ 1.22
Prpf40aQ9R1C7 Gm42501-201ENSMUST00000200220 1026 ntBASIC22.7■■□□□ 1.22
Prpf40aQ9R1C7 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40aQ9R1C7 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40aQ9R1C7 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Prpf40aQ9R1C7 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 AC158990.1-201ENSMUST00000221450 2016 ntBASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 Gm43403-201ENSMUST00000198011 1786 ntBASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Prpf40aQ9R1C7 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Prpf40aQ9R1C7 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms