Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm32051-202ENSMUST00000197905 2385 ntBASIC24.11■■□□□ 1.45
Vps53Q8CCB4 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Vps53Q8CCB4 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Vps53Q8CCB4 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Vps53Q8CCB4 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC24.1■■□□□ 1.45
Vps53Q8CCB4 Gm20634-201ENSMUST00000090779 2956 ntBASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC24.09■■□□□ 1.45
Vps53Q8CCB4 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Nsd1-206ENSMUST00000224918 1001 ntBASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Vps53Q8CCB4 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC24.08■■□□□ 1.45
Vps53Q8CCB4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Vps53Q8CCB4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
Vps53Q8CCB4 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC24.08■■□□□ 1.45
Vps53Q8CCB4 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
Vps53Q8CCB4 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
Vps53Q8CCB4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
Vps53Q8CCB4 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Vps53Q8CCB4 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Vps53Q8CCB4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Gm43034-201ENSMUST00000198678 1364 ntBASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
Vps53Q8CCB4 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC24.05■■□□□ 1.44
Vps53Q8CCB4 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC24.04■■□□□ 1.44
Vps53Q8CCB4 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Vps53Q8CCB4 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Vps53Q8CCB4 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Vps53Q8CCB4 Gm9847-201ENSMUST00000052528 599 ntBASIC24.03■■□□□ 1.44
Vps53Q8CCB4 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Vps53Q8CCB4 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Vps53Q8CCB4 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Vps53Q8CCB4 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Gm28536-201ENSMUST00000190971 1317 ntBASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Vps53Q8CCB4 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC24.01■■□□□ 1.43
Vps53Q8CCB4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
Vps53Q8CCB4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Vps53Q8CCB4 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC24■■□□□ 1.43
Vps53Q8CCB4 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Vps53Q8CCB4 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Vps53Q8CCB4 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
Vps53Q8CCB4 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Vps53Q8CCB4 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC23.99■■□□□ 1.43
Vps53Q8CCB4 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Vps53Q8CCB4 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Vps53Q8CCB4 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Vps53Q8CCB4 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Gm22238-201ENSMUST00000175222 88 ntBASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Gm40881-201ENSMUST00000223397 166 ntBASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
Vps53Q8CCB4 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 153.3 ms