Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trim47Q8C0E3 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Trim47Q8C0E3 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Trim47Q8C0E3 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Trim47Q8C0E3 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Trim47Q8C0E3 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
Trim47Q8C0E3 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Trim47Q8C0E3 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC23.1■■□□□ 1.29
Trim47Q8C0E3 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trim47Q8C0E3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Trim47Q8C0E3 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Trim47Q8C0E3 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.09■■□□□ 1.29
Trim47Q8C0E3 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.09■■□□□ 1.29
Trim47Q8C0E3 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trim47Q8C0E3 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trim47Q8C0E3 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trim47Q8C0E3 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Trim47Q8C0E3 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Trim47Q8C0E3 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
Trim47Q8C0E3 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
Trim47Q8C0E3 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC23.07■■□□□ 1.28
Trim47Q8C0E3 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
Trim47Q8C0E3 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Trim47Q8C0E3 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
Trim47Q8C0E3 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC23.06■■□□□ 1.28
Trim47Q8C0E3 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC23.06■■□□□ 1.28
Trim47Q8C0E3 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
Trim47Q8C0E3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Trim47Q8C0E3 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Gm32051-202ENSMUST00000197905 2385 ntBASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Gm9847-201ENSMUST00000052528 599 ntBASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Trim47Q8C0E3 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim47Q8C0E3 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC23.03■■□□□ 1.28
Trim47Q8C0E3 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim47Q8C0E3 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.03■■□□□ 1.28
Trim47Q8C0E3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Trim47Q8C0E3 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC23.03■■□□□ 1.28
Trim47Q8C0E3 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC23.03■■□□□ 1.28
Trim47Q8C0E3 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim47Q8C0E3 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC23.02■■□□□ 1.28
Trim47Q8C0E3 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC23.02■■□□□ 1.28
Trim47Q8C0E3 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC23.02■■□□□ 1.28
Trim47Q8C0E3 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim47Q8C0E3 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Trim47Q8C0E3 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Trim47Q8C0E3 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC23■■□□□ 1.27
Trim47Q8C0E3 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC23■■□□□ 1.27
Trim47Q8C0E3 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC23■■□□□ 1.27
Trim47Q8C0E3 Gm12922-201ENSMUST00000120626 809 ntBASIC23■■□□□ 1.27
Trim47Q8C0E3 Gm21956-201ENSMUST00000179946 522 ntBASIC23■■□□□ 1.27
Trim47Q8C0E3 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trim47Q8C0E3 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC23■■□□□ 1.27
Trim47Q8C0E3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Trim47Q8C0E3 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim47Q8C0E3 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Trim47Q8C0E3 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.99■■□□□ 1.27
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms