Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
Npc1l1Q6T3U4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Npc1l1Q6T3U4 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC25.13■■□□□ 1.61
Npc1l1Q6T3U4 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Npc1l1Q6T3U4 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Npc1l1Q6T3U4 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Npc1l1Q6T3U4 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Gm27454-201ENSMUST00000185090 204 ntBASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
Npc1l1Q6T3U4 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC25.11■■□□□ 1.61
Npc1l1Q6T3U4 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Npc1l1Q6T3U4 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Npc1l1Q6T3U4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
Npc1l1Q6T3U4 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Npc1l1Q6T3U4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Npc1l1Q6T3U4 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
Npc1l1Q6T3U4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Npc1l1Q6T3U4 Gm12821-201ENSMUST00000120022 600 ntBASIC25.09■■□□□ 1.61
Npc1l1Q6T3U4 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC25.09■■□□□ 1.61
Npc1l1Q6T3U4 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC25.09■■□□□ 1.61
Npc1l1Q6T3U4 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC25.08■■□□□ 1.61
Npc1l1Q6T3U4 Gm43403-201ENSMUST00000198011 1786 ntBASIC25.08■■□□□ 1.6
Npc1l1Q6T3U4 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC25.08■■□□□ 1.6
Npc1l1Q6T3U4 Gm45417-201ENSMUST00000209533 758 ntBASIC25.08■■□□□ 1.6
Npc1l1Q6T3U4 Golgb1-201ENSMUST00000023534 498 ntBASIC25.08■■□□□ 1.6
Npc1l1Q6T3U4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.6
Npc1l1Q6T3U4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Npc1l1Q6T3U4 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Npc1l1Q6T3U4 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Npc1l1Q6T3U4 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Npc1l1Q6T3U4 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Npc1l1Q6T3U4 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Npc1l1Q6T3U4 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Npc1l1Q6T3U4 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
Npc1l1Q6T3U4 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Npc1l1Q6T3U4 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Npc1l1Q6T3U4 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Npc1l1Q6T3U4 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Npc1l1Q6T3U4 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
Npc1l1Q6T3U4 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Npc1l1Q6T3U4 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC25.05■■□□□ 1.6
Npc1l1Q6T3U4 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC25.05■■□□□ 1.6
Npc1l1Q6T3U4 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC25.04■■□□□ 1.6
Npc1l1Q6T3U4 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Npc1l1Q6T3U4 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
Npc1l1Q6T3U4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Npc1l1Q6T3U4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Npc1l1Q6T3U4 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Npc1l1Q6T3U4 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
Npc1l1Q6T3U4 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC25.02■■□□□ 1.6
Npc1l1Q6T3U4 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Npc1l1Q6T3U4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC25.01■■□□□ 1.59
Npc1l1Q6T3U4 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Npc1l1Q6T3U4 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
Npc1l1Q6T3U4 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC25■■□□□ 1.59
Npc1l1Q6T3U4 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Npc1l1Q6T3U4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Npc1l1Q6T3U4 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Npc1l1Q6T3U4 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Npc1l1Q6T3U4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC24.99■■□□□ 1.59
Npc1l1Q6T3U4 Dmtn-209ENSMUST00000228295 2572 ntBASIC24.98■■□□□ 1.59
Npc1l1Q6T3U4 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
Npc1l1Q6T3U4 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Npc1l1Q6T3U4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Npc1l1Q6T3U4 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
Npc1l1Q6T3U4 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Npc1l1Q6T3U4 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Npc1l1Q6T3U4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Npc1l1Q6T3U4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC24.97■■□□□ 1.59
Npc1l1Q6T3U4 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Npc1l1Q6T3U4 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Npc1l1Q6T3U4 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Npc1l1Q6T3U4 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Npc1l1Q6T3U4 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Npc1l1Q6T3U4 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms