Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Gm44428-201ENSMUST00000204474 874 ntBASIC20.06■□□□□ 0.8
Col28a1Q2UY11 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col28a1Q2UY11 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col28a1Q2UY11 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Gm15043-201ENSMUST00000118843 1543 ntBASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col28a1Q2UY11 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col28a1Q2UY11 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col28a1Q2UY11 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col28a1Q2UY11 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
Col28a1Q2UY11 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 AC117769.4-201ENSMUST00000225679 685 ntBASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col28a1Q2UY11 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col28a1Q2UY11 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.02■□□□□ 0.8
Col28a1Q2UY11 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Col28a1Q2UY11 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col28a1Q2UY11 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Col28a1Q2UY11 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col28a1Q2UY11 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
Col28a1Q2UY11 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Gm15546-201ENSMUST00000122095 826 ntBASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col28a1Q2UY11 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col28a1Q2UY11 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col28a1Q2UY11 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Col28a1Q2UY11 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col28a1Q2UY11 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC20■□□□□ 0.79
Col28a1Q2UY11 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Col28a1Q2UY11 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Col28a1Q2UY11 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col28a1Q2UY11 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col28a1Q2UY11 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col28a1Q2UY11 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Col28a1Q2UY11 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Col28a1Q2UY11 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Col28a1Q2UY11 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Col28a1Q2UY11 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Col28a1Q2UY11 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Col28a1Q2UY11 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms