Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Rfx3P48381 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Rfx3P48381 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC18.7■□□□□ 0.58
Rfx3P48381 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx3P48381 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx3P48381 Nsd1-206ENSMUST00000224918 1001 ntBASIC18.7■□□□□ 0.58
Rfx3P48381 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx3P48381 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Rfx3P48381 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
Rfx3P48381 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Rfx3P48381 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Rfx3P48381 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Rfx3P48381 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Rfx3P48381 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Rfx3P48381 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC18.68■□□□□ 0.58
Rfx3P48381 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
Rfx3P48381 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx3P48381 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Rfx3P48381 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Rfx3P48381 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Rfx3P48381 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx3P48381 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx3P48381 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx3P48381 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx3P48381 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx3P48381 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Rfx3P48381 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx3P48381 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx3P48381 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Rfx3P48381 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Rfx3P48381 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Rfx3P48381 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.64■□□□□ 0.58
Rfx3P48381 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Rfx3P48381 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx3P48381 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx3P48381 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Rfx3P48381 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx3P48381 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx3P48381 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Rfx3P48381 Retreg2-201ENSMUST00000097694 2561 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC18.63■□□□□ 0.57
Rfx3P48381 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC18.63■□□□□ 0.57
Rfx3P48381 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Rfx3P48381 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Rfx3P48381 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Rfx3P48381 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx3P48381 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx3P48381 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx3P48381 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.62■□□□□ 0.57
Rfx3P48381 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC18.62■□□□□ 0.57
Rfx3P48381 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx3P48381 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx3P48381 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Rfx3P48381 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Rfx3P48381 Slc12a8-204ENSMUST00000121925 2656 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Rfx3P48381 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.61■□□□□ 0.57
Rfx3P48381 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Rfx3P48381 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Rfx3P48381 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Rfx3P48381 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx3P48381 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Rfx3P48381 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx3P48381 Gm4430-201ENSMUST00000192413 1943 ntBASIC18.6■□□□□ 0.57
Rfx3P48381 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx3P48381 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Rfx3P48381 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
Rfx3P48381 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Rfx3P48381 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms