Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cdx1P18111 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cdx1P18111 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Cdx1P18111 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Cdx1P18111 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cdx1P18111 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cdx1P18111 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Cdx1P18111 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Cdx1P18111 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Cdx1P18111 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Cdx1P18111 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC16.54■□□□□ 0.24
Cdx1P18111 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Cdx1P18111 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Gm5067-201ENSMUST00000170449 1009 ntBASIC16.54■□□□□ 0.24
Cdx1P18111 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Cdx1P18111 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Cdx1P18111 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Cdx1P18111 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Cdx1P18111 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Cdx1P18111 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Terc-201ENSMUST00000082862 423 ntBASIC16.52■□□□□ 0.24
Cdx1P18111 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Cdx1P18111 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Cdx1P18111 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Cdx1P18111 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
Cdx1P18111 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdx1P18111 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.23
Cdx1P18111 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Cdx1P18111 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Cdx1P18111 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC16.51■□□□□ 0.23
Cdx1P18111 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdx1P18111 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdx1P18111 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Cdx1P18111 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Gm10420-201ENSMUST00000121713 882 ntBASIC16.5■□□□□ 0.23
Cdx1P18111 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Cdx1P18111 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
Cdx1P18111 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx1P18111 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC16.48■□□□□ 0.23
Cdx1P18111 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Cdx1P18111 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Gm14121-201ENSMUST00000121441 1380 ntBASIC16.48■□□□□ 0.23
Cdx1P18111 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx1P18111 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx1P18111 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx1P18111 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx1P18111 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx1P18111 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Cdx1P18111 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.46■□□□□ 0.23
Cdx1P18111 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Cdx1P18111 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.46■□□□□ 0.23
Cdx1P18111 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx1P18111 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cdx1P18111 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
Cdx1P18111 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx1P18111 Gm43545-201ENSMUST00000196765 2779 ntBASIC16.45■□□□□ 0.22
Cdx1P18111 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms