Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gm4430-201ENSMUST00000192413 1943 ntBASIC23.31■■□□□ 1.32
Pcdha4O88689 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Pcdha4O88689 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Gm22238-201ENSMUST00000175222 88 ntBASIC23.31■■□□□ 1.32
Pcdha4O88689 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Pcdha4O88689 Gm32051-202ENSMUST00000197905 2385 ntBASIC23.3■■□□□ 1.32
Pcdha4O88689 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdha4O88689 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC23.3■■□□□ 1.32
Pcdha4O88689 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Pcdha4O88689 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC23.29■■□□□ 1.32
Pcdha4O88689 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
Pcdha4O88689 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Pcdha4O88689 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Pcdha4O88689 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC23.28■■□□□ 1.32
Pcdha4O88689 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Pcdha4O88689 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdha4O88689 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
Pcdha4O88689 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC23.27■■□□□ 1.32
Pcdha4O88689 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
Pcdha4O88689 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
Pcdha4O88689 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Pcdha4O88689 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdha4O88689 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC23.26■■□□□ 1.31
Pcdha4O88689 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
Pcdha4O88689 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
Pcdha4O88689 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
Pcdha4O88689 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC23.25■■□□□ 1.31
Pcdha4O88689 Gm44949-201ENSMUST00000206423 1450 ntBASIC23.25■■□□□ 1.31
Pcdha4O88689 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdha4O88689 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC23.25■■□□□ 1.31
Pcdha4O88689 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Pcdha4O88689 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
Pcdha4O88689 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha4O88689 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha4O88689 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha4O88689 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC23.24■■□□□ 1.31
Pcdha4O88689 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Pcdha4O88689 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
Pcdha4O88689 Gm5913-201ENSMUST00000119397 1399 ntBASIC23.24■■□□□ 1.31
Pcdha4O88689 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC23.24■■□□□ 1.31
Pcdha4O88689 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC23.23■■□□□ 1.31
Pcdha4O88689 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Pcdha4O88689 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC23.22■■□□□ 1.31
Pcdha4O88689 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha4O88689 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha4O88689 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha4O88689 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC23.22■■□□□ 1.31
Pcdha4O88689 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Pcdha4O88689 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC23.21■■□□□ 1.31
Pcdha4O88689 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Pcdha4O88689 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Pcdha4O88689 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.31
Pcdha4O88689 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha4O88689 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha4O88689 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha4O88689 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha4O88689 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha4O88689 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
Pcdha4O88689 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC23.19■■□□□ 1.3
Pcdha4O88689 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Pcdha4O88689 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC23.19■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms