Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col5a1O88207 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.16■□□□□ 0.66
Col5a1O88207 Gm9207-201ENSMUST00000198773 1115 ntBASIC19.16■□□□□ 0.66
Col5a1O88207 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col5a1O88207 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col5a1O88207 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.16■□□□□ 0.66
Col5a1O88207 Gm43137-201ENSMUST00000198052 594 ntBASIC19.16■□□□□ 0.66
Col5a1O88207 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col5a1O88207 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Col5a1O88207 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col5a1O88207 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.15■□□□□ 0.66
Col5a1O88207 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Col5a1O88207 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col5a1O88207 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC19.15■□□□□ 0.66
Col5a1O88207 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Col5a1O88207 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col5a1O88207 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col5a1O88207 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col5a1O88207 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col5a1O88207 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col5a1O88207 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Col5a1O88207 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC19.14■□□□□ 0.65
Col5a1O88207 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col5a1O88207 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col5a1O88207 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col5a1O88207 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC19.14■□□□□ 0.65
Col5a1O88207 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Col5a1O88207 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col5a1O88207 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Col5a1O88207 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Col5a1O88207 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col5a1O88207 AC115037.1-201ENSMUST00000223391 2173 ntBASIC19.13■□□□□ 0.65
Col5a1O88207 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC19.13■□□□□ 0.65
Col5a1O88207 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC19.13■□□□□ 0.65
Col5a1O88207 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.13■□□□□ 0.65
Col5a1O88207 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col5a1O88207 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col5a1O88207 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.12■□□□□ 0.65
Col5a1O88207 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col5a1O88207 Acot5-202ENSMUST00000072505 1401 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col5a1O88207 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col5a1O88207 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.11■□□□□ 0.65
Col5a1O88207 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col5a1O88207 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col5a1O88207 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.11■□□□□ 0.65
Col5a1O88207 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Col5a1O88207 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.11■□□□□ 0.65
Col5a1O88207 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col5a1O88207 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
Col5a1O88207 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col5a1O88207 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Col5a1O88207 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC19.1■□□□□ 0.65
Col5a1O88207 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col5a1O88207 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
Col5a1O88207 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Col5a1O88207 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col5a1O88207 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col5a1O88207 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col5a1O88207 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.1■□□□□ 0.65
Col5a1O88207 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col5a1O88207 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Col5a1O88207 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col5a1O88207 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col5a1O88207 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col5a1O88207 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.09■□□□□ 0.65
Col5a1O88207 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
Col5a1O88207 Gm37179-201ENSMUST00000194862 823 ntBASIC19.09■□□□□ 0.65
Col5a1O88207 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col5a1O88207 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col5a1O88207 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col5a1O88207 Gm27405-201ENSMUST00000184201 112 ntBASIC19.08■□□□□ 0.64
Col5a1O88207 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col5a1O88207 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col5a1O88207 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Col5a1O88207 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col5a1O88207 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col5a1O88207 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Col5a1O88207 Mir7075-201ENSMUST00000184187 82 ntBASIC19.07■□□□□ 0.64
Col5a1O88207 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Col5a1O88207 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col5a1O88207 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col5a1O88207 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Col5a1O88207 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col5a1O88207 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Col5a1O88207 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.05■□□□□ 0.64
Col5a1O88207 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col5a1O88207 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Col5a1O88207 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC19.05■□□□□ 0.64
Col5a1O88207 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC19.05■□□□□ 0.64
Col5a1O88207 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Col5a1O88207 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Col5a1O88207 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Col5a1O88207 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.04■□□□□ 0.64
Col5a1O88207 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms