Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm14193-201ENSMUST00000105067 153 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Tomm5-202ENSMUST00000107808 679 ntTSL 2 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm8731-201ENSMUST00000118088 412 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm11957-201ENSMUST00000118304 779 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm14724-201ENSMUST00000118400 537 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Sfi1-204ENSMUST00000118627 831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm11266-201ENSMUST00000139835 1271 ntTSL 2 BASIC12.29□□□□□ -0.44
Col9a1Q05722 2610001J05Rik-202ENSMUST00000155856 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm21943-201ENSMUST00000178181 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm20917-201ENSMUST00000179922 990 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm6098-201ENSMUST00000180234 330 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm28449-201ENSMUST00000187655 506 ntTSL 3 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm20917-202ENSMUST00000188706 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm44814-201ENSMUST00000207018 434 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm45085-201ENSMUST00000209100 441 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm3635-201ENSMUST00000212314 354 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 AC165245.1-201ENSMUST00000214181 636 ntTSL 3 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Nqo2-203ENSMUST00000220844 957 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Ppbp-201ENSMUST00000031319 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 1700111E14Rik-201ENSMUST00000031863 908 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 AC123619.2-202ENSMUST00000225097 1568 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm44562-201ENSMUST00000207194 1347 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm45605-201ENSMUST00000210265 4269 ntBASIC12.29□□□□□ -0.44
Col9a1Q05722 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col9a1Q05722 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC12.29□□□□□ -0.44
Col9a1Q05722 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Cntnap2-201ENSMUST00000060839 1540 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Kcnab2-203ENSMUST00000159186 1552 ntTSL 5 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm14704-201ENSMUST00000120300 874 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Utp23-202ENSMUST00000136129 779 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 1700001J11Rik-201ENSMUST00000185917 759 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Pantr1-211ENSMUST00000186656 647 ntTSL 3 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm28917-201ENSMUST00000187294 237 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm37026-201ENSMUST00000191917 535 ntTSL 5 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm37599-201ENSMUST00000193067 489 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm42783-201ENSMUST00000197075 795 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Ckb-ps2-201ENSMUST00000198886 1001 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm43962-201ENSMUST00000203898 190 ntBASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 AC153816.1-201ENSMUST00000217870 764 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 AC159282.1-204ENSMUST00000219472 780 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Fxr1-202ENSMUST00000167354 1986 ntTSL 5 BASIC12.28□□□□□ -0.44
Col9a1Q05722 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Gm16237-201ENSMUST00000156666 1319 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col9a1Q05722 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms